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PIX-14323: Restore GitNexus analyze workflow #351

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andrei wants to merge 1 commit from agent/devops/pix-14323 into master
pull from: agent/devops/pix-14323
merge into: europa-tech-srl:master
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andrei commented 2026-07-19 23:40:57 +00:00
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Thinking Path

  • Paperclip is the control plane for autonomous AI companies, and agents rely on repo-local instructions plus GitNexus to inspect code safely.
  • This change is in the developer tooling / agent-instructions path around GitNexus indexing and pre-push delivery gates.
  • gitnexus status showed the europa-tech-agents index was stale, while the documented node .gitnexus/run.cjs analyze path initially failed because .gitnexus/run.cjs was absent in this worktree.
  • Running gitnexus analyze regenerated the runner and refreshed GitNexus context, but delivery exposed two stale hook/check mismatches in this branch.
  • The branch needed the missing shared-root pre-push guard script and an allow-marker for user-facing remediation text so the mandatory hook could run without bypass.
  • This pull request restores the normal path: node .gitnexus/run.cjs analyze, GitNexus status/query, and pre-push checks now complete in the isolated worktree.
  • The benefit is that future agents can refresh GitNexus and push reviewed branches without falling into stale-index or broken-hook failure loops.

Linked Issues or Issue Description

  • Refs PIX-14323

What Changed

  • Refreshed the generated GitNexus context in AGENTS.md and .claude/skills/gitnexus/* after a successful analyze of this worktree.
  • Added the missing check:not-shared-root-push package script and its node --test test script.
  • Added scripts/check-not-shared-root-push.mjs and scripts/check-not-shared-root-push.test.mjs, matching the existing shared-root guard used by the configured pre-push hook.
  • Added a paperclip:allow-git-push marker to server/src/services/git-delivery-gate.ts for a user-facing instruction string, so check:no-git-push does not treat documentation text as executable remote mutation.

Verification

  • gitnexus status initially stale, then fresh after rebuild: indexed commit 6d5d938, status up-to-date.
  • gitnexus analyze succeeded after clean rebuild: 40,341 nodes, 90,498 edges, 1399 clusters, 300 flows.
  • node .gitnexus/run.cjs analyze --index-only succeeded after --repair-fts/full rebuild fallback.
  • gitnexus impact "GitNexus — Code Intelligence" --direction upstream: risk LOW, 0 impacted.
  • gitnexus impact "Always Do" --direction upstream: risk LOW, 0 impacted.
  • gitnexus impact "git-delivery-gate.ts" --direction upstream: risk LOW, 4 upstream files, 0 execution flows.
  • gitnexus detect-changes: low risk before commit; clean tree after final commit reported no uncommitted changes.
  • pnpm run check:not-shared-root-push: passed.
  • pnpm run test:check-not-shared-root-push: 8 tests passed.
  • pnpm run check:no-git-push: passed.
  • pnpm run test:check-no-git-push: 14 tests passed.
  • Pre-push hook passed during git push: shared-root guard, pnpm run typecheck / pnpm -r typecheck, and check:no-git-push all passed.
  • Remote branch verified with git ls-remote: 6d5d93893f.

Risks

  • Low risk: most changes are generated GitNexus instructions or isolated tooling guards.
  • The new package scripts are pure Node scripts and are only used by the existing pre-push hook/test path.
  • The git-delivery-gate.ts change is a comment-only allow-marker above a string literal; runtime behavior is unchanged.
  • CI and Greptile have not been independently observed after PR creation yet.

For core feature work, check ROADMAP.md first and discuss it in #dev before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See CONTRIBUTING.md.

Model Used

  • OpenAI Codex CLI, gpt-5.5, tool-enabled coding run in the Paperclip workspace.

Checklist

  • I have included a thinking path that traces from project context to this change
  • I have specified the model used (with version and capability details)
  • I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work
  • I have searched GitHub for duplicate or related PRs and linked them above
  • I have either (a) linked existing issues with Fixes: # / Closes # / Refs # OR (b) described the issue in-PR following the relevant issue template
  • I have run tests locally and they pass
  • I have added or updated tests where applicable
  • If this change affects the UI, I have included before/after screenshots
  • I have updated relevant documentation to reflect my changes
  • I have considered and documented any risks above
  • All Paperclip CI gates are green
  • Greptile is 5/5 with no open P2s, recommendations, or follow-ups
  • I will address all Greptile and reviewer comments before requesting merge
## Thinking Path > - Paperclip is the control plane for autonomous AI companies, and agents rely on repo-local instructions plus GitNexus to inspect code safely. > - This change is in the developer tooling / agent-instructions path around GitNexus indexing and pre-push delivery gates. > - gitnexus status showed the europa-tech-agents index was stale, while the documented node .gitnexus/run.cjs analyze path initially failed because .gitnexus/run.cjs was absent in this worktree. > - Running gitnexus analyze regenerated the runner and refreshed GitNexus context, but delivery exposed two stale hook/check mismatches in this branch. > - The branch needed the missing shared-root pre-push guard script and an allow-marker for user-facing remediation text so the mandatory hook could run without bypass. > - This pull request restores the normal path: node .gitnexus/run.cjs analyze, GitNexus status/query, and pre-push checks now complete in the isolated worktree. > - The benefit is that future agents can refresh GitNexus and push reviewed branches without falling into stale-index or broken-hook failure loops. ## Linked Issues or Issue Description - Refs PIX-14323 ## What Changed - Refreshed the generated GitNexus context in AGENTS.md and .claude/skills/gitnexus/* after a successful analyze of this worktree. - Added the missing check:not-shared-root-push package script and its node --test test script. - Added scripts/check-not-shared-root-push.mjs and scripts/check-not-shared-root-push.test.mjs, matching the existing shared-root guard used by the configured pre-push hook. - Added a paperclip:allow-git-push marker to server/src/services/git-delivery-gate.ts for a user-facing instruction string, so check:no-git-push does not treat documentation text as executable remote mutation. ## Verification - gitnexus status initially stale, then fresh after rebuild: indexed commit 6d5d938, status up-to-date. - gitnexus analyze succeeded after clean rebuild: 40,341 nodes, 90,498 edges, 1399 clusters, 300 flows. - node .gitnexus/run.cjs analyze --index-only succeeded after --repair-fts/full rebuild fallback. - gitnexus impact "GitNexus — Code Intelligence" --direction upstream: risk LOW, 0 impacted. - gitnexus impact "Always Do" --direction upstream: risk LOW, 0 impacted. - gitnexus impact "git-delivery-gate.ts" --direction upstream: risk LOW, 4 upstream files, 0 execution flows. - gitnexus detect-changes: low risk before commit; clean tree after final commit reported no uncommitted changes. - pnpm run check:not-shared-root-push: passed. - pnpm run test:check-not-shared-root-push: 8 tests passed. - pnpm run check:no-git-push: passed. - pnpm run test:check-no-git-push: 14 tests passed. - Pre-push hook passed during git push: shared-root guard, pnpm run typecheck / pnpm -r typecheck, and check:no-git-push all passed. - Remote branch verified with git ls-remote: 6d5d93893f2693d4ad48774c0074b41b4203bbae. ## Risks - Low risk: most changes are generated GitNexus instructions or isolated tooling guards. - The new package scripts are pure Node scripts and are only used by the existing pre-push hook/test path. - The git-delivery-gate.ts change is a comment-only allow-marker above a string literal; runtime behavior is unchanged. - CI and Greptile have not been independently observed after PR creation yet. > For core feature work, check [ROADMAP.md](ROADMAP.md) first and discuss it in #dev before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See CONTRIBUTING.md. ## Model Used - OpenAI Codex CLI, gpt-5.5, tool-enabled coding run in the Paperclip workspace. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with Fixes: # / Closes # / Refs # OR (b) described the issue in-PR following the relevant issue template - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] If this change affects the UI, I have included before/after screenshots - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge
PIX-14323 refresh GitNexus index context
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6d5d93893f
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This pull request has changes conflicting with the target branch.
  • AGENTS.md
  • package.json
  • server/src/services/git-delivery-gate.ts
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